28,235 research outputs found

    The pseudotemporal bootstrap for predicting glaucoma from cross-sectional visual field data

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    Progressive loss of the field of vision is characteristic of a number of eye diseases such as glaucoma, a leading cause of irreversible blindness in the world. Recently, there has been an explosion in the amount of data being stored on patients who suffer from visual deterioration, including visual field (VF) test, retinal image, and frequent intraocular pressure measurements. Like the progression of many biological and medical processes, VF progression is inherently temporal in nature. However, many datasets associated with the study of such processes are often cross sectional and the time dimension is not measured due to the expensive nature of such studies. In this paper, we address this issue by developing a method to build artificial time series, which we call pseudo time series from cross-sectional data. This involves building trajectories through all of the data that can then, in turn, be used to build temporal models for forecasting (which would otherwise be impossible without longitudinal data). Glaucoma, like many diseases, is a family of conditions and it is, therefore, likely that there will be a number of key trajectories that are important in understanding the disease. In order to deal with such situations, we extend the idea of pseudo time series by using resampling techniques to build multiple sequences prior to model building. This approach naturally handles outliers and multiple possible disease trajectories. We demonstrate some key properties of our approach on synthetic data and present very promising results on VF data for predicting glaucoma

    Histone crosstalk directed by H2B ubiquitination is required for chromatin boundary integrity

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    Genomic maps of chromatin modifications have provided evidence for the partitioning of genomes into domains of distinct chromatin states, which assist coordinated gene regulation. The maintenance of chromatin domain integrity can require the setting of boundaries. The HS4 insulator element marks the 3′ boundary of a heterochromatin region located upstream of the chicken β-globin gene cluster. Here we show that HS4 recruits the E3 ligase RNF20/BRE1A to mediate H2B mono-ubiquitination (H2Bub1) at this insulator. Knockdown experiments show that RNF20 is required for H2Bub1 and processive H3K4 methylation. Depletion of RNF20 results in a collapse of the active histone modification signature at the HS4 chromatin boundary, where H2Bub1, H3K4 methylation, and hyperacetylation of H3, H4, and H2A.Z are rapidly lost. A remarkably similar set of events occurs at the HSA/HSB regulatory elements of the FOLR1 gene, which mark the 5′ boundary of the same heterochromatin region. We find that persistent H2Bub1 at the HSA/HSB and HS4 elements is required for chromatin boundary integrity. The loss of boundary function leads to the sequential spreading of H3K9me2, H3K9me3, and H4K20me3 over the entire 50 kb FOLR1 and β-globin region and silencing of FOLR1 expression. These findings show that the HSA/HSB and HS4 boundary elements direct a cascade of active histone modifications that defend the FOLR1 and β-globin gene loci from the pervasive encroachment of an adjacent heterochromatin domain. We propose that many gene loci employ H2Bub1-dependent boundaries to prevent heterochromatin spreading

    Radioisotope thermionic power supply for spacecraft

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    Power supply design for unmanned electric propulsion missions to outer planets utilizes a store of curium-244 in compact array of capsules as energy source. Supply subassemblies are: heat source, converter equipment which supplies power, and safety equipment. System is designed for a 72,000 hour mission

    DIVERSIFYING AGRICULTURAL SYSTEMS: AN EXTERNAL ANALYSIS OF STATE VALUE-ADDED PROGRAMS

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    An increasing number of farmers in the United States are finding more opportunity to participate in value-added activities beyond their commodity production. Issues' such as low farm income, increasing marketing margins, and a desire to enhance demand for local commodities-generate more interest in identifying suitable value-added activities. Many states are providing programs to help promote and support farmers interested in leading the development of new food products. This paper examines the objectives and development strategies of several value-added state programs. Special attention is paid to the extent to which the programs create opportunities for farmers in different income groups. Programs profiled in this research include Iowa's Rural Economic Value-Added Mentoring Program (REVAMP), North Dakota's Agricultural Utilization Research Institute (AURI), Minnesota's Agricultural Products Utilization Commission (APUC), and other centers and programs in Colorado, Tennessee, Mississippi, and Oklahoma. A survey is conducted of the center directors to provide a profile of each program's scope and state's objectives, development strategy, and performance measures. This paper assesses the effectiveness of variously structured value-added programs as stated by the survey; it also summarizes recommended strategies for improvement. Cost considerations and long-term justification of these value-added centers is also considered. Institutional design, recommendations, central policy issues, and program performance measures are discussed. States considering the implementation or expansion of such programs will want to evaluate their design based on these findings.Agricultural and Food Policy,

    Thermionic reactor power system: Effects of radiation on integration with Manned Space Station

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    The application of a thermionic reactor power system to the modular space station is described. The nominal net power is 40 kWe, with the power system designed to be applicable over the power range from 25 to 60 kWe. The power system is designed to be launched by the space shuttle. Radiation protection is provided by LiH neutron shielding and W gamma shielding in a shaped 4 pion configuration, i.e., the reactor is shielded on all sides but not to equal extent. Isodose contours are presented for the region around the modular space station. Levels and spectral distribution of radiation are given for later evaluation of effects on space station experiments. Parametric data on the effects of separation distance on power system mass are presented
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